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G

GeneIntervalElement - Class in it.dmi.unict.ferrolab.DataMining.Common
Representation of a gene-range pair
GeneIntervalElement(String, double, double) - Constructor for class it.dmi.unict.ferrolab.DataMining.Common.GeneIntervalElement
Make a new gene-range pair
GeneIntervalElement(String) - Constructor for class it.dmi.unict.ferrolab.DataMining.Common.GeneIntervalElement
Make a new gene-range pair from its text representation
GeneValueDescriptor - Class in it.dmi.unict.ferrolab.DataMining.Common
 
GeneValueDescriptor(String, String, double) - Constructor for class it.dmi.unict.ferrolab.DataMining.Common.GeneValueDescriptor
 
get(int, int) - Method in class it.dmi.unict.ferrolab.DataMining.Matrix.MatrixImpl.Matrix
 
get(int, int) - Method in class it.dmi.unict.ferrolab.DataMining.Matrix.MatrixImpl.SimpleMatrix
 
get(int, int) - Method in interface it.dmi.unict.ferrolab.DataMining.Matrix.MatrixInterface
 
getClasses() - Method in interface it.dmi.unict.ferrolab.DataMining.Matrix.ClassifiedMatrix.ClassifiedMatrixInterface
 
getClasses() - Method in class it.dmi.unict.ferrolab.DataMining.Matrix.MatrixImpl.Matrix
 
getClassesSize() - Method in interface it.dmi.unict.ferrolab.DataMining.Matrix.ClassifiedMatrix.ClassifiedMatrixInterface
 
getClassesSize() - Method in class it.dmi.unict.ferrolab.DataMining.Matrix.MatrixImpl.Matrix
 
getClassId() - Method in class it.dmi.unict.ferrolab.DataMining.CrossValidation.Results.SingleResult
 
getClassification() - Method in class it.dmi.unict.ferrolab.DataMining.Common.Rule
Get the classification of this rule
getClassifiedAs() - Method in class it.dmi.unict.ferrolab.DataMining.CrossValidation.Results.SingleResult
 
getClassifiedId() - Method in class it.dmi.unict.ferrolab.DataMining.CrossValidation.Results.SingleResult
 
getClassifierPerformancePercentage() - Method in class it.dmi.unict.ferrolab.DataMining.CrossValidation.Results.ConfusionMatrix
 
getClassName() - Method in class it.dmi.unict.ferrolab.DataMining.CrossValidation.Results.SingleResult
 
getClassName() - Method in interface it.dmi.unict.ferrolab.DataMining.Matrix.ClassifiedMatrix.ClassifiedMatrixElementInterface
 
getClassName() - Method in class it.dmi.unict.ferrolab.DataMining.Matrix.MatrixImpl.MatrixElement
 
getClassName() - Method in class it.dmi.unict.ferrolab.DataMining.MIDClass.ItemSet
 
getClassSize(String) - Method in interface it.dmi.unict.ferrolab.DataMining.Matrix.ClassifiedMatrix.ClassifiedMatrixInterface
 
getClassSize(String) - Method in class it.dmi.unict.ferrolab.DataMining.Matrix.MatrixImpl.Matrix
 
getColumn() - Method in class it.dmi.unict.ferrolab.DataMining.CrossValidation.Results.SingleResult
 
getColumn(int) - Method in class it.dmi.unict.ferrolab.DataMining.Matrix.MatrixImpl.Matrix
 
getColumn(int) - Method in class it.dmi.unict.ferrolab.DataMining.Matrix.MatrixImpl.SimpleMatrix
 
getColumn(int) - Method in interface it.dmi.unict.ferrolab.DataMining.Matrix.MatrixInterface
 
getColumn() - Method in class it.dmi.unict.ferrolab.DataMining.Matrix.Partition.Column.MatrixColumnDescriptor
 
getColumnClass(int) - Method in interface it.dmi.unict.ferrolab.DataMining.Matrix.ClassifiedMatrix.ClassifiedMatrixInterface
 
getColumnClass(int) - Method in class it.dmi.unict.ferrolab.DataMining.Matrix.MatrixImpl.Matrix
 
getColumnNames() - Method in interface it.dmi.unict.ferrolab.DataMining.Bridge.GridOutput
Gets the column names of the output grid
getColumnNames() - Method in class it.dmi.unict.ferrolab.DataMining.Matrix.MatrixImpl.Matrix
 
getColumnNames() - Method in class it.dmi.unict.ferrolab.DataMining.Matrix.MatrixImpl.SimpleMatrix
 
getConfusionMatrix() - Method in class it.dmi.unict.ferrolab.DataMining.CrossValidation.Results.CrossValidationResult
 
getCorrectlyClassified() - Method in class it.dmi.unict.ferrolab.DataMining.CrossValidation.Results.ConfusionMatrix
 
getCutOff() - Method in interface it.dmi.unict.ferrolab.DataMining.Matrix.DiscretizedMatrix.DiscretizedMatrixElementInterface
 
getCutOff() - Method in class it.dmi.unict.ferrolab.DataMining.Matrix.MatrixImpl.MatrixElement
 
getCutPoints() - Method in interface it.dmi.unict.ferrolab.DataMining.Discretization.Algorithms.AlgorithmInterface
Gets the list of cut points after the algorithm was run
getCutPoints() - Method in class it.dmi.unict.ferrolab.DataMining.Discretization.Algorithms.CACCDiscretization
 
getCutPoints() - Method in class it.dmi.unict.ferrolab.DataMining.Discretization.Algorithms.EqualIntervalWidthDiscretization
 
getCutPoints() - Method in class it.dmi.unict.ferrolab.DataMining.Discretization.Algorithms.ID3Discretization
 
getCutPoints() - Method in class it.dmi.unict.ferrolab.DataMining.Discretization.Algorithms.MDLDiscretization
 
getCutPoints() - Method in class it.dmi.unict.ferrolab.DataMining.Discretization.Algorithms.USDDiscretization
 
getCutPointsForRow(int) - Method in class it.dmi.unict.ferrolab.DataMining.Discretization.Discretization
 
getData() - Method in interface it.dmi.unict.ferrolab.DataMining.Bridge.GridOutput
Gets the output data
getData() - Method in class it.dmi.unict.ferrolab.DataMining.Matrix.MatrixImpl.Matrix
 
getData() - Method in class it.dmi.unict.ferrolab.DataMining.Matrix.MatrixImpl.SimpleMatrix
 
getDefaultTextRepresentation() - Method in class it.dmi.unict.ferrolab.DataMining.Common.GeneIntervalElement
Get the default beautified representation of a gene-range pair
getDefaultTextRepresentation() - Method in class it.dmi.unict.ferrolab.DataMining.Common.Rule
Get the default textual representation of a gene-range pair
getDimensions() - Method in class it.dmi.unict.ferrolab.DataMining.Matrix.MatrixImpl.Matrix
 
getDimensions() - Method in class it.dmi.unict.ferrolab.DataMining.Matrix.MatrixImpl.SimpleMatrix
 
getDimensions() - Method in interface it.dmi.unict.ferrolab.DataMining.Matrix.MatrixInterface
 
getDiscretizedInterval() - Method in interface it.dmi.unict.ferrolab.DataMining.Matrix.DiscretizedMatrix.DiscretizedMatrixElementInterface
 
getDiscretizedInterval(Beautifier<double[]>) - Method in interface it.dmi.unict.ferrolab.DataMining.Matrix.DiscretizedMatrix.DiscretizedMatrixElementInterface
 
getDiscretizedInterval() - Method in class it.dmi.unict.ferrolab.DataMining.Matrix.MatrixImpl.MatrixElement
 
getDiscretizedInterval(Beautifier<double[]>) - Method in class it.dmi.unict.ferrolab.DataMining.Matrix.MatrixImpl.MatrixElement
 
getDiscretizedIntervalMax() - Method in interface it.dmi.unict.ferrolab.DataMining.Matrix.DiscretizedMatrix.DiscretizedMatrixElementInterface
 
getDiscretizedIntervalMax() - Method in class it.dmi.unict.ferrolab.DataMining.Matrix.MatrixImpl.MatrixElement
 
getDiscretizedIntervalMin() - Method in interface it.dmi.unict.ferrolab.DataMining.Matrix.DiscretizedMatrix.DiscretizedMatrixElementInterface
 
getDiscretizedIntervalMin() - Method in class it.dmi.unict.ferrolab.DataMining.Matrix.MatrixImpl.MatrixElement
 
getDiscretizedValue() - Method in interface it.dmi.unict.ferrolab.DataMining.Matrix.DiscretizedMatrix.DiscretizedMatrixElementInterface
 
getDiscretizedValue() - Method in class it.dmi.unict.ferrolab.DataMining.Matrix.MatrixImpl.MatrixElement
 
getElementName() - Method in class it.dmi.unict.ferrolab.DataMining.Common.GeneValueDescriptor
 
getElementName() - Method in interface it.dmi.unict.ferrolab.DataMining.Matrix.MatrixElementInterface
 
getElementName() - Method in class it.dmi.unict.ferrolab.DataMining.Matrix.MatrixImpl.MatrixElement
 
getElementName() - Method in class it.dmi.unict.ferrolab.DataMining.Matrix.MatrixImpl.SimpleMatrixElement
 
getElements() - Method in interface it.dmi.unict.ferrolab.DataMining.Matrix.Partition.ElementsDescriptorInterface
 
getElements() - Method in class it.dmi.unict.ferrolab.DataMining.Matrix.Partition.PartitionImpl.ElementsDescriptorImpl
 
getExcluded(int) - Method in class it.dmi.unict.ferrolab.DataMining.Matrix.Partition.Column.MatrixColumnPartition
 
getExcluded() - Method in class it.dmi.unict.ferrolab.DataMining.Matrix.Partition.Column.MatrixColumnPartition
 
getExcluded(int) - Method in interface it.dmi.unict.ferrolab.DataMining.Matrix.Partition.ElementsPartitionInterface
 
getExcluded() - Method in interface it.dmi.unict.ferrolab.DataMining.Matrix.Partition.ElementsPartitionInterface
 
getExcluded(int) - Method in class it.dmi.unict.ferrolab.DataMining.Matrix.Partition.PartitionImpl.ElementsPartitionImpl
 
getExcluded() - Method in class it.dmi.unict.ferrolab.DataMining.Matrix.Partition.PartitionImpl.ElementsPartitionImpl
 
getFold() - Method in class it.dmi.unict.ferrolab.DataMining.CrossValidation.Results.FoldResult
 
getFoldsSize(int) - Method in class it.dmi.unict.ferrolab.DataMining.CrossValidation.AbstractCrossValidation
 
getGeneIntervalPairs() - Method in class it.dmi.unict.ferrolab.DataMining.Common.Rule
Gets gene-range pairs
getGeneIntervalString(Matrix) - Method in class it.dmi.unict.ferrolab.DataMining.MIDClass.ItemSet
 
getGeneName() - Method in class it.dmi.unict.ferrolab.DataMining.Common.GeneValueDescriptor
 
getGeneName() - Method in interface it.dmi.unict.ferrolab.DataMining.Matrix.MatrixElementInterface
 
getGeneName() - Method in class it.dmi.unict.ferrolab.DataMining.Matrix.MatrixImpl.MatrixElement
 
getGeneName() - Method in class it.dmi.unict.ferrolab.DataMining.Matrix.MatrixImpl.SimpleMatrixElement
 
getGeneValues(Matrix, String) - Method in class it.dmi.unict.ferrolab.DataMining.MIDClass.ItemSet
 
getIndex() - Method in class it.dmi.unict.ferrolab.DataMining.Discretization.Pair
 
getIntervalSize() - Method in class it.dmi.unict.ferrolab.DataMining.Discretization.Discretization
 
getItemSets() - Method in class it.dmi.unict.ferrolab.DataMining.MIDClass.CommonWorkflow
 
getItemSize() - Method in class it.dmi.unict.ferrolab.DataMining.MIDClass.ItemSet
 
getMatrix() - Method in class it.dmi.unict.ferrolab.DataMining.CrossValidation.Results.ConfusionMatrix
 
getMatrix() - Method in class it.dmi.unict.ferrolab.DataMining.Matrix.MatrixImpl.Matrix
 
getMatrix() - Method in class it.dmi.unict.ferrolab.DataMining.Matrix.MatrixImpl.SimpleMatrix
 
getMatrix() - Method in interface it.dmi.unict.ferrolab.DataMining.Matrix.MatrixInterface
 
getMax() - Method in class it.dmi.unict.ferrolab.DataMining.Common.GeneIntervalElement
Get the max value in the interval
getMaxDiscretizedValueRow(int) - Method in interface it.dmi.unict.ferrolab.DataMining.Matrix.DiscretizedMatrix.DiscretizedMatrixInterface
 
getMaxDiscretizedValueRow(int) - Method in class it.dmi.unict.ferrolab.DataMining.Matrix.MatrixImpl.Matrix
 
getMean() - Method in class it.dmi.unict.ferrolab.DataMining.Discretization.Pair
 
getMin() - Method in class it.dmi.unict.ferrolab.DataMining.Common.GeneIntervalElement
Get the min value in the interval
getMinDiscretizedValueRow(int) - Method in interface it.dmi.unict.ferrolab.DataMining.Matrix.DiscretizedMatrix.DiscretizedMatrixInterface
 
getMinDiscretizedValueRow(int) - Method in class it.dmi.unict.ferrolab.DataMining.Matrix.MatrixImpl.Matrix
 
getMisclassified() - Method in class it.dmi.unict.ferrolab.DataMining.CrossValidation.Results.ConfusionMatrix
 
getName() - Method in class it.dmi.unict.ferrolab.DataMining.Common.GeneIntervalElement
Get the name of a gene
getNumberOfBins() - Method in class it.dmi.unict.ferrolab.DataMining.Discretization.Discretization
 
getNumberOfClasses() - Method in class it.dmi.unict.ferrolab.DataMining.CrossValidation.Results.ConfusionMatrix
 
getNumberOfFolds() - Method in class it.dmi.unict.ferrolab.DataMining.CrossValidation.Results.CrossValidationResult
 
getNumberOfNotOk() - Method in class it.dmi.unict.ferrolab.DataMining.CrossValidation.Results.FoldResult
 
getNumberOfNotOkWarning() - Method in class it.dmi.unict.ferrolab.DataMining.CrossValidation.Results.FoldResult
 
getNumberOfOk() - Method in class it.dmi.unict.ferrolab.DataMining.CrossValidation.Results.FoldResult
 
getNumberOfOkWarning() - Method in class it.dmi.unict.ferrolab.DataMining.CrossValidation.Results.FoldResult
 
getNumClasses() - Method in interface it.dmi.unict.ferrolab.DataMining.Matrix.ClassifiedMatrix.ClassifiedMatrixInterface
 
getNumClasses() - Method in class it.dmi.unict.ferrolab.DataMining.Matrix.MatrixImpl.Matrix
 
getNumCols() - Method in class it.dmi.unict.ferrolab.DataMining.Matrix.MatrixImpl.Matrix
 
getNumCols() - Method in class it.dmi.unict.ferrolab.DataMining.Matrix.MatrixImpl.SimpleMatrix
 
getNumCols() - Method in interface it.dmi.unict.ferrolab.DataMining.Matrix.MatrixInterface
 
getNumRows() - Method in class it.dmi.unict.ferrolab.DataMining.Matrix.MatrixImpl.Matrix
 
getNumRows() - Method in class it.dmi.unict.ferrolab.DataMining.Matrix.MatrixImpl.SimpleMatrix
 
getNumRows() - Method in interface it.dmi.unict.ferrolab.DataMining.Matrix.MatrixInterface
 
getOriginalClassification() - Method in class it.dmi.unict.ferrolab.DataMining.Matrix.Partition.Column.MatrixColumnDescriptor
 
getOriginalClassification() - Method in interface it.dmi.unict.ferrolab.DataMining.Matrix.Partition.ElementsDescriptorInterface
 
getOriginalClassification() - Method in class it.dmi.unict.ferrolab.DataMining.Matrix.Partition.PartitionImpl.ElementsDescriptorImpl
 
getOriginalIndex() - Method in class it.dmi.unict.ferrolab.DataMining.Matrix.Partition.Column.MatrixColumnDescriptor
 
getOriginalIndex() - Method in interface it.dmi.unict.ferrolab.DataMining.Matrix.Partition.ElementsDescriptorInterface
 
getOriginalIndex() - Method in class it.dmi.unict.ferrolab.DataMining.Matrix.Partition.PartitionImpl.ElementsDescriptorImpl
 
getOutput() - Method in class it.dmi.unict.ferrolab.DataMining.Bridge.StringOutput
 
getProbeValue(int) - Method in class it.dmi.unict.ferrolab.DataMining.MIDClass.Item
 
getResults() - Method in class it.dmi.unict.ferrolab.DataMining.MIDClass.MIDClassClassifierWorkflow
 
getResults() - Method in class it.dmi.unict.ferrolab.DataMining.MIDClass.MIDClassRulesWorkflow
 
getResults() - Method in class it.dmi.unict.ferrolab.DataMining.Workflow.Pipelines.MultiplePipelineWorkflow
 
getResults() - Method in class it.dmi.unict.ferrolab.DataMining.Workflow.Pipelines.Pipeline
 
getResults() - Method in interface it.dmi.unict.ferrolab.DataMining.Workflow.StandardWorkflow
Get the results of this workflow as an object
getResultsByFold() - Method in class it.dmi.unict.ferrolab.DataMining.CrossValidation.Results.CrossValidationResult
 
getRow(int) - Method in class it.dmi.unict.ferrolab.DataMining.Matrix.MatrixImpl.Matrix
 
getRow(int) - Method in class it.dmi.unict.ferrolab.DataMining.Matrix.MatrixImpl.SimpleMatrix
 
getRow(int) - Method in interface it.dmi.unict.ferrolab.DataMining.Matrix.MatrixInterface
 
getRowNames() - Method in interface it.dmi.unict.ferrolab.DataMining.Bridge.GridOutput
Gets the row names of the output grid
getRowNames() - Method in class it.dmi.unict.ferrolab.DataMining.Matrix.MatrixImpl.Matrix
 
getRowNames() - Method in class it.dmi.unict.ferrolab.DataMining.Matrix.MatrixImpl.SimpleMatrix
 
getRules() - Method in class it.dmi.unict.ferrolab.DataMining.MIDClass.CommonWorkflow
 
getRules(Matrix, Discretization) - Method in class it.dmi.unict.ferrolab.DataMining.MIDClass.ItemSet
 
getRules(Matrix, String, Discretization) - Method in class it.dmi.unict.ferrolab.DataMining.MIDClass.ItemSet
 
getScores() - Method in class it.dmi.unict.ferrolab.DataMining.CrossValidation.Results.SingleResult
 
getSupport() - Method in class it.dmi.unict.ferrolab.DataMining.MIDClass.Item
 
getTextRepresentation() - Method in class it.dmi.unict.ferrolab.DataMining.Common.GeneIntervalElement
Get the textual representation of a gene-range pair
getTextRepresentation(Beautifier<GeneIntervalElement>) - Method in class it.dmi.unict.ferrolab.DataMining.Common.GeneIntervalElement
Get the textual representation of a gene-range pair
getTextRepresentation() - Method in class it.dmi.unict.ferrolab.DataMining.Common.Rule
Get the textual representation of a gene-range pair
getTextRepresentation(Beautifier<Rule>) - Method in class it.dmi.unict.ferrolab.DataMining.Common.Rule
Get the textual representation of a gene-range pair
getTotalElements() - Method in class it.dmi.unict.ferrolab.DataMining.CrossValidation.Results.ConfusionMatrix
 
getTotalNumber() - Method in class it.dmi.unict.ferrolab.DataMining.CrossValidation.Results.FoldResult
 
getType() - Method in interface it.dmi.unict.ferrolab.DataMining.Matrix.Partition.ElementsPartitionInterface
 
getType() - Method in class it.dmi.unict.ferrolab.DataMining.Matrix.Partition.PartitionImpl.ElementsPartitionImpl
 
getUniqueClasses() - Method in interface it.dmi.unict.ferrolab.DataMining.Matrix.ClassifiedMatrix.ClassifiedMatrixInterface
 
getUniqueClasses() - Method in class it.dmi.unict.ferrolab.DataMining.Matrix.MatrixImpl.Matrix
 
getUniqueClassesId() - Method in class it.dmi.unict.ferrolab.DataMining.CrossValidation.Results.ConfusionMatrix
 
getUniqueClassesIds() - Method in interface it.dmi.unict.ferrolab.DataMining.Matrix.ClassifiedMatrix.ClassifiedMatrixInterface
 
getUniqueClassesIds() - Method in class it.dmi.unict.ferrolab.DataMining.Matrix.MatrixImpl.Matrix
 
getUsage() - Method in class it.dmi.unict.ferrolab.DataMining.MIDClass.Item
 
getUsage(int) - Method in class it.dmi.unict.ferrolab.DataMining.MIDClass.Item
 
getUsage() - Method in class it.dmi.unict.ferrolab.DataMining.MIDClass.ItemSet
 
getUsageAsString() - Method in class it.dmi.unict.ferrolab.DataMining.MIDClass.Item
 
getV() - Method in class it.dmi.unict.ferrolab.DataMining.Matrix.MatrixImpl.MatrixElement
 
getValue() - Method in class it.dmi.unict.ferrolab.DataMining.Common.GeneValueDescriptor
 
getValue() - Method in interface it.dmi.unict.ferrolab.DataMining.Matrix.MatrixElementInterface
 
getValue() - Method in class it.dmi.unict.ferrolab.DataMining.Matrix.MatrixImpl.MatrixElement
 
getValue() - Method in class it.dmi.unict.ferrolab.DataMining.Matrix.MatrixImpl.SimpleMatrixElement
 
getValues() - Method in class it.dmi.unict.ferrolab.DataMining.MIDClass.ItemSet
 
gridOutput - Variable in class it.dmi.unict.ferrolab.DataMining.Bridge.BridgeImpl.BridgeImpl
 
GridOutput - Interface in it.dmi.unict.ferrolab.DataMining.Bridge
An object that represents something that can be displayed as a datagrid
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