- GeneIntervalElement - Class in it.dmi.unict.ferrolab.DataMining.Common
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Representation of a gene-range pair
- GeneIntervalElement(String, double, double) - Constructor for class it.dmi.unict.ferrolab.DataMining.Common.GeneIntervalElement
-
Make a new gene-range pair
- GeneIntervalElement(String) - Constructor for class it.dmi.unict.ferrolab.DataMining.Common.GeneIntervalElement
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Make a new gene-range pair from its text representation
- GeneValueDescriptor - Class in it.dmi.unict.ferrolab.DataMining.Common
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- GeneValueDescriptor(String, String, double) - Constructor for class it.dmi.unict.ferrolab.DataMining.Common.GeneValueDescriptor
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- get(int, int) - Method in class it.dmi.unict.ferrolab.DataMining.Matrix.MatrixImpl.Matrix
-
- get(int, int) - Method in class it.dmi.unict.ferrolab.DataMining.Matrix.MatrixImpl.SimpleMatrix
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- get(int, int) - Method in interface it.dmi.unict.ferrolab.DataMining.Matrix.MatrixInterface
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- getClasses() - Method in interface it.dmi.unict.ferrolab.DataMining.Matrix.ClassifiedMatrix.ClassifiedMatrixInterface
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- getClasses() - Method in class it.dmi.unict.ferrolab.DataMining.Matrix.MatrixImpl.Matrix
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- getClassesSize() - Method in interface it.dmi.unict.ferrolab.DataMining.Matrix.ClassifiedMatrix.ClassifiedMatrixInterface
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- getClassesSize() - Method in class it.dmi.unict.ferrolab.DataMining.Matrix.MatrixImpl.Matrix
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- getClassId() - Method in class it.dmi.unict.ferrolab.DataMining.CrossValidation.Results.SingleResult
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- getClassification() - Method in class it.dmi.unict.ferrolab.DataMining.Common.Rule
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Get the classification of this rule
- getClassifiedAs() - Method in class it.dmi.unict.ferrolab.DataMining.CrossValidation.Results.SingleResult
-
- getClassifiedId() - Method in class it.dmi.unict.ferrolab.DataMining.CrossValidation.Results.SingleResult
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- getClassifierPerformancePercentage() - Method in class it.dmi.unict.ferrolab.DataMining.CrossValidation.Results.ConfusionMatrix
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- getClassName() - Method in class it.dmi.unict.ferrolab.DataMining.CrossValidation.Results.SingleResult
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- getClassName() - Method in interface it.dmi.unict.ferrolab.DataMining.Matrix.ClassifiedMatrix.ClassifiedMatrixElementInterface
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- getClassName() - Method in class it.dmi.unict.ferrolab.DataMining.Matrix.MatrixImpl.MatrixElement
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- getClassName() - Method in class it.dmi.unict.ferrolab.DataMining.MIDClass.ItemSet
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- getClassSize(String) - Method in interface it.dmi.unict.ferrolab.DataMining.Matrix.ClassifiedMatrix.ClassifiedMatrixInterface
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- getClassSize(String) - Method in class it.dmi.unict.ferrolab.DataMining.Matrix.MatrixImpl.Matrix
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- getColumn() - Method in class it.dmi.unict.ferrolab.DataMining.CrossValidation.Results.SingleResult
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- getColumn(int) - Method in class it.dmi.unict.ferrolab.DataMining.Matrix.MatrixImpl.Matrix
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- getColumn(int) - Method in class it.dmi.unict.ferrolab.DataMining.Matrix.MatrixImpl.SimpleMatrix
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- getColumn(int) - Method in interface it.dmi.unict.ferrolab.DataMining.Matrix.MatrixInterface
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- getColumn() - Method in class it.dmi.unict.ferrolab.DataMining.Matrix.Partition.Column.MatrixColumnDescriptor
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- getColumnClass(int) - Method in interface it.dmi.unict.ferrolab.DataMining.Matrix.ClassifiedMatrix.ClassifiedMatrixInterface
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- getColumnClass(int) - Method in class it.dmi.unict.ferrolab.DataMining.Matrix.MatrixImpl.Matrix
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- getColumnNames() - Method in interface it.dmi.unict.ferrolab.DataMining.Bridge.GridOutput
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Gets the column names of the output grid
- getColumnNames() - Method in class it.dmi.unict.ferrolab.DataMining.Matrix.MatrixImpl.Matrix
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- getColumnNames() - Method in class it.dmi.unict.ferrolab.DataMining.Matrix.MatrixImpl.SimpleMatrix
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- getConfusionMatrix() - Method in class it.dmi.unict.ferrolab.DataMining.CrossValidation.Results.CrossValidationResult
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- getCorrectlyClassified() - Method in class it.dmi.unict.ferrolab.DataMining.CrossValidation.Results.ConfusionMatrix
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- getCutOff() - Method in interface it.dmi.unict.ferrolab.DataMining.Matrix.DiscretizedMatrix.DiscretizedMatrixElementInterface
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- getCutOff() - Method in class it.dmi.unict.ferrolab.DataMining.Matrix.MatrixImpl.MatrixElement
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- getCutPoints() - Method in interface it.dmi.unict.ferrolab.DataMining.Discretization.Algorithms.AlgorithmInterface
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Gets the list of cut points after the algorithm was run
- getCutPoints() - Method in class it.dmi.unict.ferrolab.DataMining.Discretization.Algorithms.CACCDiscretization
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- getCutPoints() - Method in class it.dmi.unict.ferrolab.DataMining.Discretization.Algorithms.EqualIntervalWidthDiscretization
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- getCutPoints() - Method in class it.dmi.unict.ferrolab.DataMining.Discretization.Algorithms.ID3Discretization
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- getCutPoints() - Method in class it.dmi.unict.ferrolab.DataMining.Discretization.Algorithms.MDLDiscretization
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- getCutPoints() - Method in class it.dmi.unict.ferrolab.DataMining.Discretization.Algorithms.USDDiscretization
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- getCutPointsForRow(int) - Method in class it.dmi.unict.ferrolab.DataMining.Discretization.Discretization
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- getData() - Method in interface it.dmi.unict.ferrolab.DataMining.Bridge.GridOutput
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Gets the output data
- getData() - Method in class it.dmi.unict.ferrolab.DataMining.Matrix.MatrixImpl.Matrix
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- getData() - Method in class it.dmi.unict.ferrolab.DataMining.Matrix.MatrixImpl.SimpleMatrix
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- getDefaultTextRepresentation() - Method in class it.dmi.unict.ferrolab.DataMining.Common.GeneIntervalElement
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Get the default beautified representation of a gene-range pair
- getDefaultTextRepresentation() - Method in class it.dmi.unict.ferrolab.DataMining.Common.Rule
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Get the default textual representation of a gene-range pair
- getDimensions() - Method in class it.dmi.unict.ferrolab.DataMining.Matrix.MatrixImpl.Matrix
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- getDimensions() - Method in class it.dmi.unict.ferrolab.DataMining.Matrix.MatrixImpl.SimpleMatrix
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- getDimensions() - Method in interface it.dmi.unict.ferrolab.DataMining.Matrix.MatrixInterface
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- getDiscretizedInterval() - Method in interface it.dmi.unict.ferrolab.DataMining.Matrix.DiscretizedMatrix.DiscretizedMatrixElementInterface
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- getDiscretizedInterval(Beautifier<double[]>) - Method in interface it.dmi.unict.ferrolab.DataMining.Matrix.DiscretizedMatrix.DiscretizedMatrixElementInterface
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- getDiscretizedInterval() - Method in class it.dmi.unict.ferrolab.DataMining.Matrix.MatrixImpl.MatrixElement
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- getDiscretizedInterval(Beautifier<double[]>) - Method in class it.dmi.unict.ferrolab.DataMining.Matrix.MatrixImpl.MatrixElement
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- getDiscretizedIntervalMax() - Method in interface it.dmi.unict.ferrolab.DataMining.Matrix.DiscretizedMatrix.DiscretizedMatrixElementInterface
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- getDiscretizedIntervalMax() - Method in class it.dmi.unict.ferrolab.DataMining.Matrix.MatrixImpl.MatrixElement
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- getDiscretizedIntervalMin() - Method in interface it.dmi.unict.ferrolab.DataMining.Matrix.DiscretizedMatrix.DiscretizedMatrixElementInterface
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- getDiscretizedIntervalMin() - Method in class it.dmi.unict.ferrolab.DataMining.Matrix.MatrixImpl.MatrixElement
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- getDiscretizedValue() - Method in interface it.dmi.unict.ferrolab.DataMining.Matrix.DiscretizedMatrix.DiscretizedMatrixElementInterface
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- getDiscretizedValue() - Method in class it.dmi.unict.ferrolab.DataMining.Matrix.MatrixImpl.MatrixElement
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- getElementName() - Method in class it.dmi.unict.ferrolab.DataMining.Common.GeneValueDescriptor
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- getElementName() - Method in interface it.dmi.unict.ferrolab.DataMining.Matrix.MatrixElementInterface
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- getElementName() - Method in class it.dmi.unict.ferrolab.DataMining.Matrix.MatrixImpl.MatrixElement
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- getElementName() - Method in class it.dmi.unict.ferrolab.DataMining.Matrix.MatrixImpl.SimpleMatrixElement
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- getElements() - Method in interface it.dmi.unict.ferrolab.DataMining.Matrix.Partition.ElementsDescriptorInterface
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- getElements() - Method in class it.dmi.unict.ferrolab.DataMining.Matrix.Partition.PartitionImpl.ElementsDescriptorImpl
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- getExcluded(int) - Method in class it.dmi.unict.ferrolab.DataMining.Matrix.Partition.Column.MatrixColumnPartition
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- getExcluded() - Method in class it.dmi.unict.ferrolab.DataMining.Matrix.Partition.Column.MatrixColumnPartition
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- getExcluded(int) - Method in interface it.dmi.unict.ferrolab.DataMining.Matrix.Partition.ElementsPartitionInterface
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- getExcluded() - Method in interface it.dmi.unict.ferrolab.DataMining.Matrix.Partition.ElementsPartitionInterface
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- getExcluded(int) - Method in class it.dmi.unict.ferrolab.DataMining.Matrix.Partition.PartitionImpl.ElementsPartitionImpl
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- getExcluded() - Method in class it.dmi.unict.ferrolab.DataMining.Matrix.Partition.PartitionImpl.ElementsPartitionImpl
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- getFold() - Method in class it.dmi.unict.ferrolab.DataMining.CrossValidation.Results.FoldResult
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- getFoldsSize(int) - Method in class it.dmi.unict.ferrolab.DataMining.CrossValidation.AbstractCrossValidation
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- getGeneIntervalPairs() - Method in class it.dmi.unict.ferrolab.DataMining.Common.Rule
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Gets gene-range pairs
- getGeneIntervalString(Matrix) - Method in class it.dmi.unict.ferrolab.DataMining.MIDClass.ItemSet
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- getGeneName() - Method in class it.dmi.unict.ferrolab.DataMining.Common.GeneValueDescriptor
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- getGeneName() - Method in interface it.dmi.unict.ferrolab.DataMining.Matrix.MatrixElementInterface
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- getGeneName() - Method in class it.dmi.unict.ferrolab.DataMining.Matrix.MatrixImpl.MatrixElement
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- getGeneName() - Method in class it.dmi.unict.ferrolab.DataMining.Matrix.MatrixImpl.SimpleMatrixElement
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- getGeneValues(Matrix, String) - Method in class it.dmi.unict.ferrolab.DataMining.MIDClass.ItemSet
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- getIndex() - Method in class it.dmi.unict.ferrolab.DataMining.Discretization.Pair
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- getIntervalSize() - Method in class it.dmi.unict.ferrolab.DataMining.Discretization.Discretization
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- getItemSets() - Method in class it.dmi.unict.ferrolab.DataMining.MIDClass.CommonWorkflow
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- getItemSize() - Method in class it.dmi.unict.ferrolab.DataMining.MIDClass.ItemSet
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- getMatrix() - Method in class it.dmi.unict.ferrolab.DataMining.CrossValidation.Results.ConfusionMatrix
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- getMatrix() - Method in class it.dmi.unict.ferrolab.DataMining.Matrix.MatrixImpl.Matrix
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- getMatrix() - Method in class it.dmi.unict.ferrolab.DataMining.Matrix.MatrixImpl.SimpleMatrix
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- getMatrix() - Method in interface it.dmi.unict.ferrolab.DataMining.Matrix.MatrixInterface
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- getMax() - Method in class it.dmi.unict.ferrolab.DataMining.Common.GeneIntervalElement
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Get the max value in the interval
- getMaxDiscretizedValueRow(int) - Method in interface it.dmi.unict.ferrolab.DataMining.Matrix.DiscretizedMatrix.DiscretizedMatrixInterface
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- getMaxDiscretizedValueRow(int) - Method in class it.dmi.unict.ferrolab.DataMining.Matrix.MatrixImpl.Matrix
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- getMean() - Method in class it.dmi.unict.ferrolab.DataMining.Discretization.Pair
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- getMin() - Method in class it.dmi.unict.ferrolab.DataMining.Common.GeneIntervalElement
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Get the min value in the interval
- getMinDiscretizedValueRow(int) - Method in interface it.dmi.unict.ferrolab.DataMining.Matrix.DiscretizedMatrix.DiscretizedMatrixInterface
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- getMinDiscretizedValueRow(int) - Method in class it.dmi.unict.ferrolab.DataMining.Matrix.MatrixImpl.Matrix
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- getMisclassified() - Method in class it.dmi.unict.ferrolab.DataMining.CrossValidation.Results.ConfusionMatrix
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- getName() - Method in class it.dmi.unict.ferrolab.DataMining.Common.GeneIntervalElement
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Get the name of a gene
- getNumberOfBins() - Method in class it.dmi.unict.ferrolab.DataMining.Discretization.Discretization
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- getNumberOfClasses() - Method in class it.dmi.unict.ferrolab.DataMining.CrossValidation.Results.ConfusionMatrix
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- getNumberOfFolds() - Method in class it.dmi.unict.ferrolab.DataMining.CrossValidation.Results.CrossValidationResult
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- getNumberOfNotOk() - Method in class it.dmi.unict.ferrolab.DataMining.CrossValidation.Results.FoldResult
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- getNumberOfNotOkWarning() - Method in class it.dmi.unict.ferrolab.DataMining.CrossValidation.Results.FoldResult
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- getNumberOfOk() - Method in class it.dmi.unict.ferrolab.DataMining.CrossValidation.Results.FoldResult
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- getNumberOfOkWarning() - Method in class it.dmi.unict.ferrolab.DataMining.CrossValidation.Results.FoldResult
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- getNumClasses() - Method in interface it.dmi.unict.ferrolab.DataMining.Matrix.ClassifiedMatrix.ClassifiedMatrixInterface
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- getNumClasses() - Method in class it.dmi.unict.ferrolab.DataMining.Matrix.MatrixImpl.Matrix
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- getNumCols() - Method in class it.dmi.unict.ferrolab.DataMining.Matrix.MatrixImpl.Matrix
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- getNumCols() - Method in class it.dmi.unict.ferrolab.DataMining.Matrix.MatrixImpl.SimpleMatrix
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- getNumCols() - Method in interface it.dmi.unict.ferrolab.DataMining.Matrix.MatrixInterface
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- getNumRows() - Method in class it.dmi.unict.ferrolab.DataMining.Matrix.MatrixImpl.Matrix
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- getNumRows() - Method in class it.dmi.unict.ferrolab.DataMining.Matrix.MatrixImpl.SimpleMatrix
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- getNumRows() - Method in interface it.dmi.unict.ferrolab.DataMining.Matrix.MatrixInterface
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- getOriginalClassification() - Method in class it.dmi.unict.ferrolab.DataMining.Matrix.Partition.Column.MatrixColumnDescriptor
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- getOriginalClassification() - Method in interface it.dmi.unict.ferrolab.DataMining.Matrix.Partition.ElementsDescriptorInterface
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- getOriginalClassification() - Method in class it.dmi.unict.ferrolab.DataMining.Matrix.Partition.PartitionImpl.ElementsDescriptorImpl
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- getOriginalIndex() - Method in class it.dmi.unict.ferrolab.DataMining.Matrix.Partition.Column.MatrixColumnDescriptor
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- getOriginalIndex() - Method in interface it.dmi.unict.ferrolab.DataMining.Matrix.Partition.ElementsDescriptorInterface
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- getOriginalIndex() - Method in class it.dmi.unict.ferrolab.DataMining.Matrix.Partition.PartitionImpl.ElementsDescriptorImpl
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- getOutput() - Method in class it.dmi.unict.ferrolab.DataMining.Bridge.StringOutput
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- getProbeValue(int) - Method in class it.dmi.unict.ferrolab.DataMining.MIDClass.Item
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- getResults() - Method in class it.dmi.unict.ferrolab.DataMining.MIDClass.MIDClassClassifierWorkflow
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- getResults() - Method in class it.dmi.unict.ferrolab.DataMining.MIDClass.MIDClassRulesWorkflow
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- getResults() - Method in class it.dmi.unict.ferrolab.DataMining.Workflow.Pipelines.MultiplePipelineWorkflow
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- getResults() - Method in class it.dmi.unict.ferrolab.DataMining.Workflow.Pipelines.Pipeline
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- getResults() - Method in interface it.dmi.unict.ferrolab.DataMining.Workflow.StandardWorkflow
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Get the results of this workflow as an object
- getResultsByFold() - Method in class it.dmi.unict.ferrolab.DataMining.CrossValidation.Results.CrossValidationResult
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- getRow(int) - Method in class it.dmi.unict.ferrolab.DataMining.Matrix.MatrixImpl.Matrix
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- getRow(int) - Method in class it.dmi.unict.ferrolab.DataMining.Matrix.MatrixImpl.SimpleMatrix
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- getRow(int) - Method in interface it.dmi.unict.ferrolab.DataMining.Matrix.MatrixInterface
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- getRowNames() - Method in interface it.dmi.unict.ferrolab.DataMining.Bridge.GridOutput
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Gets the row names of the output grid
- getRowNames() - Method in class it.dmi.unict.ferrolab.DataMining.Matrix.MatrixImpl.Matrix
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- getRowNames() - Method in class it.dmi.unict.ferrolab.DataMining.Matrix.MatrixImpl.SimpleMatrix
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- getRules() - Method in class it.dmi.unict.ferrolab.DataMining.MIDClass.CommonWorkflow
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- getRules(Matrix, Discretization) - Method in class it.dmi.unict.ferrolab.DataMining.MIDClass.ItemSet
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- getRules(Matrix, String, Discretization) - Method in class it.dmi.unict.ferrolab.DataMining.MIDClass.ItemSet
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- getScores() - Method in class it.dmi.unict.ferrolab.DataMining.CrossValidation.Results.SingleResult
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- getSupport() - Method in class it.dmi.unict.ferrolab.DataMining.MIDClass.Item
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- getTextRepresentation() - Method in class it.dmi.unict.ferrolab.DataMining.Common.GeneIntervalElement
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Get the textual representation of a gene-range pair
- getTextRepresentation(Beautifier<GeneIntervalElement>) - Method in class it.dmi.unict.ferrolab.DataMining.Common.GeneIntervalElement
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Get the textual representation of a gene-range pair
- getTextRepresentation() - Method in class it.dmi.unict.ferrolab.DataMining.Common.Rule
-
Get the textual representation of a gene-range pair
- getTextRepresentation(Beautifier<Rule>) - Method in class it.dmi.unict.ferrolab.DataMining.Common.Rule
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Get the textual representation of a gene-range pair
- getTotalElements() - Method in class it.dmi.unict.ferrolab.DataMining.CrossValidation.Results.ConfusionMatrix
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- getTotalNumber() - Method in class it.dmi.unict.ferrolab.DataMining.CrossValidation.Results.FoldResult
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- getType() - Method in interface it.dmi.unict.ferrolab.DataMining.Matrix.Partition.ElementsPartitionInterface
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- getType() - Method in class it.dmi.unict.ferrolab.DataMining.Matrix.Partition.PartitionImpl.ElementsPartitionImpl
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- getUniqueClasses() - Method in interface it.dmi.unict.ferrolab.DataMining.Matrix.ClassifiedMatrix.ClassifiedMatrixInterface
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- getUniqueClasses() - Method in class it.dmi.unict.ferrolab.DataMining.Matrix.MatrixImpl.Matrix
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- getUniqueClassesId() - Method in class it.dmi.unict.ferrolab.DataMining.CrossValidation.Results.ConfusionMatrix
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- getUniqueClassesIds() - Method in interface it.dmi.unict.ferrolab.DataMining.Matrix.ClassifiedMatrix.ClassifiedMatrixInterface
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- getUniqueClassesIds() - Method in class it.dmi.unict.ferrolab.DataMining.Matrix.MatrixImpl.Matrix
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- getUsage() - Method in class it.dmi.unict.ferrolab.DataMining.MIDClass.Item
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- getUsage(int) - Method in class it.dmi.unict.ferrolab.DataMining.MIDClass.Item
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- getUsage() - Method in class it.dmi.unict.ferrolab.DataMining.MIDClass.ItemSet
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- getUsageAsString() - Method in class it.dmi.unict.ferrolab.DataMining.MIDClass.Item
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- getV() - Method in class it.dmi.unict.ferrolab.DataMining.Matrix.MatrixImpl.MatrixElement
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- getValue() - Method in class it.dmi.unict.ferrolab.DataMining.Common.GeneValueDescriptor
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- getValue() - Method in interface it.dmi.unict.ferrolab.DataMining.Matrix.MatrixElementInterface
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- getValue() - Method in class it.dmi.unict.ferrolab.DataMining.Matrix.MatrixImpl.MatrixElement
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- getValue() - Method in class it.dmi.unict.ferrolab.DataMining.Matrix.MatrixImpl.SimpleMatrixElement
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- getValues() - Method in class it.dmi.unict.ferrolab.DataMining.MIDClass.ItemSet
-
- gridOutput - Variable in class it.dmi.unict.ferrolab.DataMining.Bridge.BridgeImpl.BridgeImpl
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- GridOutput - Interface in it.dmi.unict.ferrolab.DataMining.Bridge
-
An object that represents something that can be displayed as a datagrid